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SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - NI

Population Size

Not reported
Population Size statistic card

Years

2020 - 2021

Years statistic card

Associated BioSamples

None/not available

Associated BioSamples statistic card

Geographic coverage

United Kingdom

Northern Ireland

Geographic coverage statistic card

Lead time

1-2 months

Lead time statistic card

Summary

Summary of SARS-CoV-2 lineages and mutations

Documentation

File contains basic public metadata, including sequence_name, location, date, pangolin lineage assignment, version and associated scores, scorpio VOC/VUI constellation call and associated scores, key spike protein mutations calls, and a list of all nucleotide mutations found.

Dataset type

Health and disease

Dataset sub-type

Not applicable

Keywords

Observations

Observed Node

Disambiguating Description

Measured Value

Measured Property

Observation Date

Findings

Number of results in the most recent database of sequencing results

20026

Count

17 Aug 2021

Provenance

Purpose of dataset collection

Study

Source of data extraction

LIMS

Collection source setting

Other

Patient pathway description

Relates to virus sequencing for COVID-19 only

Image contrast

Not stated

Biological sample availability

None/not available

Structural Metadata

Details

Publishing frequency

Other

Version

4.0.0

Modified

08/10/2024

Citation Requirements

ACKNOWLEDGEMENT The authors would like to acknowledge the help provided by the staff of the Honest Broker Service (HBS) within the Business Services Organisation Northern Ireland (BSO). The HBS is funded by the BSO and the Department of Health (DoH). The authors alone are responsible for the interpretation of the data and any views or opinions presented are solely those of the author and do not necessarily represent those of the BSO.

Coverage

Start date

10/03/2020

End date

09/08/2021

Time lag

1-2 weeks

Geographic coverage

United Kingdom, Northern Ireland

Maximum age range

150

Follow-up

Other

Accessibility

Language

en

Controlled vocabulary

NHS NATIONAL CODES

Format

csv

Data Access Request

Dataset pipeline status

Not available

Access rights

https://bso.hscni.net/directorates/digital-operations/honest-broker-service/

Time to dataset access

1-2 months

Access request cost

https://bso.hscni.net/wp-content/uploads/2023/09/Researcher-Pack.zip

Access method category

TRE/SDE

Access service description

Remote access can now be granted via an HSCNI tenancy of the UK Secure e-Research Platform (UK SeRP), the HBS still offer the physical safe setting in Belfast for local research.

Jurisdiction

GB-NIR

Data use limitation

Research use only

Data use requirements

Project-specific restrictions

Data Controller

Public Health Agency (PHA) NI

Data Processor

HSC Honest Broker Service

Dataset Types: Health and disease

Collection Sources: Other

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