Bookmarks
SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - NI
Population Size
Not reported
Years
2020 - 2021
Associated BioSamples
None/not available
Geographic coverage
United Kingdom
Northern Ireland
Lead time
Not applicable
Summary
Summary of SARS-CoV-2 lineages and mutations
Documentation
File contains basic public metadata, including sequence_name, location, date, pangolin lineage assignment, version and associated scores, scorpio VOC/VUI constellation call and associated scores, key spike protein mutations calls, and a list of all nucleotide mutations found.
Dataset type
Health and disease
Dataset sub-type
Not applicable
Keywords
spike, pangolin, lineage, NCS, National Core Study
Observations
Observed Node | Disambiguating Description | Measured Value | Measured Property | Observation Date |
|---|---|---|---|---|
Findings | Number of results in the most recent database of sequencing results | 20026 | Count | 17 Aug 2021 |
Provenance
Purpose of dataset collection
Study
Source of data extraction
LIMS
Collection source setting
Other
Patient pathway description
Relates to virus sequencing for COVID-19 only
Image contrast
Not stated
Biological sample availability
None/not available
Structural Metadata
Details
Publishing frequency
Other
Version
4.0.0
Modified
08/10/2024
Citation Requirements
ACKNOWLEDGEMENT The authors would like to acknowledge the help provided by the staff of the Honest Broker Service (HBS) within the Business Services Organisation Northern Ireland (BSO). The HBS is funded by the BSO and the Department of Health (DoH). The authors alone are responsible for the interpretation of the data and any views or opinions presented are solely those of the author and do not necessarily represent those of the BSO.
Coverage
Start date
10/03/2020
End date
09/08/2021
Time lag
1-2 weeks
Geographic coverage
United Kingdom, Northern Ireland
Maximum age range
150
Follow-up
Other
Accessibility
Language
en
Controlled vocabulary
NHS NATIONAL CODES
Format
csv
Data Access Request
Dataset pipeline status
Not available
Time to dataset access
Not applicable
Access request cost
Access method category
TRE/SDE
Access service description
Remote access can now be granted via an HSCNI tenancy of the UK Secure e-Research Platform (UK SeRP), the HBS still offer the physical safe setting in Belfast for local research.
Jurisdiction
GB-NIR
Data use limitation
Research use only
Data use requirements
Project-specific restrictions
Data Controller
Public Health Agency (PHA) NI
Data Processor
HSC Honest Broker Service