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Clinical characteristics of hospitalised primary biliary cholangitis patients

Population Size

7,156

People

Years

2000 - 2024

Associated BioSamples

None/not available

Geographic coverage

United Kingdom

England

Lead time

1-2 months

Summary

Detailed dataset of >3.5k patients with hospitalised Primary Biliary Cholangitis (March 2000 to January 2024). Granular care pathways. Deeply phenotyped. Serial physiology, blood markers. Demography, investigations, treatments and outcomes.

Documentation

A highly granular dataset of 7,156 Primary biliary cholangitis (PBC) hospital spell admissions containing 3,520 patients curated by PIONEER.

The dataset contains highly granular data including patient demographics, structured serial physiology, assessments, liver function tests, diagnostic codes (ICD-10 & SNOMED-CT), initial presentation, presenting symptoms, procedures (OPCS4 & SNOMED-CT), medical imaging, medications, consultations, and outcomes. The current dataset includes admissions from 30-03-2000 to 30-01-2024 but can be expanded to assess other timelines of interest.

Background: PBC is a rare, autoimmune cholestatic liver disease that puts patients at risk of life-threatening complications. PBC is primarily a disease of women, affecting approximately one in 1,000 women over the age of 40.

With an estimated total prevalence in the UK of ~3.9 per 10,000 of the population, equating to around 19,175 people in England, the survival of PBC patients is significantly worse than the general population if left untreated.

Geography: The West Midlands (WM) has a population of 6 million & includes a diverse ethnic & socio-economic mix. UHB is one of the largest NHS Trusts in England, providing direct acute services & specialist care across four hospital sites, with 2.2 million patient episodes per year, 2750 beds & > 120 ITU bed capacity. UHB runs a fully electronic healthcare record (EHR) (PICS; Birmingham Systems), a shared primary & secondary care record (Your Care Connected) & a patient portal “My Health”.

Data set availability: Data access is available via the PIONEER Hub for projects which will benefit the public or patients. This can be by developing a new understanding of disease, by providing insights into how to improve care, or by developing new models, tools, treatments, or care processes. Data access can be provided to NHS, academic, commercial, policy and third sector organisations. Applications from SMEs are welcome. There is a single data access process, with public oversight provided by our public review committee, the Data Trust Committee. Contact pioneer@uhb.nhs.uk or visit www.pioneerdatahub.co.uk for more details.

Available supplementary data: Matched controls; ambulance and community data. Unstructured data (images). We can provide the dataset in OMOP and other common data models and can build synthetic data to meet bespoke requirements.

Available supplementary support: Analytics, model build, validation & refinement; A.I. support. Data partner support for ETL (extract, transform & load) processes. Bespoke and “off the shelf” Trusted Research Environment (TRE) build and run. Consultancy with clinical, patient & end-user and purchaser access/ support. Support for regulatory requirements. Cohort discovery. Data-driven trials and “fast screen” services to assess population size.

Dataset type
Health and disease, Treatments/Interventions
Dataset sub-type
Not applicable
Dataset population size
7156

Keywords

Patient outcomes, Primary Biliary Cholangitis, rare disease, Machine learning, Artificial Intelligence, Data science, Treatment responses, biopsy, Liver, autoimmune, Gall Bladder, Hepato-pancreato biliary, PBC, Dataset

Observations

Observed Node
Disambiguating Description
Measured Value
Measured Property
Observation Date

Persons

7156 admissions between 30-03-2000 and 31-01-2024

7156

Count

25 Feb 2024

Provenance

Purpose of dataset collection
Care
Source of data extraction
EPR
Collection source setting
Secondary care - Accident and Emergency, Secondary care - Outpatients, Secondary care - In-patients
Patient pathway description
Data is representative of the multi-ethnicity population within the West Midlands (42% non white). Data includes all patients admitted during this timeframe, with National data Opt Outs applied, and therefore is representative of admissions to secondary care. Data focuses on in-patient stay in hospital during the acute episode but can be supplemented on request to include previous and subsequent hospital contacts (including outpatient appointments) and ambulance, 111, 999 data.
Image contrast
Not stated
Biological sample availability
None/not available

Structural Metadata

Details

Publishing frequency
Quarterly
Version
1.0.0
Modified

08/10/2024

Distribution release date

29/02/2024

Citation Requirements
This publication uses data from PIONEER, an ethically approved database and analytical environment (East Midlands Derby Research Ethics 20/EM/0158)

Coverage

Start date

29/03/2000

End date

31/01/2024

Time lag
Other
Geographic coverage
United Kingdom, England, West Midlands
Minimum age range
18
Maximum age range
110
Follow-up
1 - 10 Years

Accessibility

Language
en
Alignment with standardised data models
LOCAL
Controlled vocabulary
ICD10, OPCS4, SNOMED CT, LOCAL
Format
SQL

Data Access Request

Dataset pipeline status
Available
Time to dataset access
1-2 months
Access method category
TRE/SDE
Access service description

Trusted Research Environments (TRE) are built using Microsoft Azure services and hosted in the UK to provide research teams a safe, secure and agile environment which allows users to quickly analyse, interpret and form an enriched view of primary care information through a range of integrated datasets.

Health data collated from multiple sources is ingested into a secure data lake which will then allow subsets of data to be made available to research teams on approval of a data request. Once approved a customer specific TRE is made available with a standard set of leading analytical tools from Microsoft including Azure Databricks, Azure Machine Learning, Azure SQL and Azure Synapse (for large-scale data warehouses). Specific tools can be provided at an additional cost over the standard platform data access charge and the PIONEER team will work with you to determine your exact needs.

Access to the TRE is managed using the latest virtual desktop technology to provide a safe and secure end-user experience. By utilising leading edge design PIONEER are able to create TREs rapidly to enable us to service any customer requirement.

Jurisdiction
GB-ENG
Data use limitation
General research use
Data use requirements
Project-specific restrictions
Data Controller
University Hospitals Birmingham NHS Foundation Trust

Dataset Types: Health and disease, Treatments/Interventions


Collection Sources: Secondary care - Accident and Emergency, Secondary care - Outpatients, Secondary care - In-patients