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Idiopathic Pulmonary Fibrosis (IPF) Genome-wide Association Study

Population Size

Not reported

Years

2019 - 2019

Associated BioSamples

None/not available

Geographic coverage

United Kingdom

United States

Lead time

Other

Summary

Meta-analysis of GWAS of IPF susceptibility. Building up on published GWAS results (PMID: 24429156, 23583980, 29066090) and novel study samples to identify novel genes and further advance in the understanding of IPF pathogenesis and risk.

Documentation

https://doi.org/10.1164/rccm.201905-1017OC

Idiopathic pulmonary fibrosis (IPF) is characterized by the build-up of scar tissue in the lungs. It is believed that the damage to the alveolar epithelium is followed by an aberrant wound healing response leading to the deposition of dense fibrotic tissue, reducing the lungs’ flexibility and inhibiting gas transfer. IPF still has limited therapeutic interventions and a high mortality rate within 3-5 years from diagnosis. To date, genome-wide association studies (GWAS) of IPF susceptibility have associated common variants (minor allele frequency [MAF]>5%) near genes involved in host defence, telomere maintenance, cell-cell adhesion and signalling in disease susceptibility. Meta-analysis of GWAS of IPF susceptibility. Building up on published GWAS results (PMID: 24429156, 23583980, 29066090) and novel study samples, we have performed the largest GWAS of IPF susceptibility to date to identify novel genes and further advance in the understanding of IPF pathogenesis and risk (bioRxiv https://doi.org/10.1101/636761 and PMID:31710517). The discovery stage of the study comprised up to 2,668 IPF cases and 8,591 controls from 3 studies (Chicago study: 541 IPF cases and 542 controls, Colorado study: 1515 fibrotic Idiopathic Interstitial pneumonia cases and 4683 controls, UK Study: 612 IPF cases and 3366 controls) and replication was pursued in an additional 1,456 IPF cases and 11,874 controls. The genome-wide association study summary statistics from the meta-analysis of three studies totalling 2,668 cases and 8,591 controls are available here.

Dataset type
Health and disease
Dataset sub-type
Not applicable

Keywords

GWAS, IDIOPATHIC PULMONARY FIBROSIS, IDIOPATHIC INTERSTITIAL PNEUMONIA, IPF, BREATHE

Provenance

Image contrast
Not stated
Biological sample availability
None/not available

Details

Publishing frequency
Static
Version
1.0.0
Modified

08/10/2024

Distribution release date

22/10/2019

Citation Requirements
Department of Health Sciences, University of Leicester, UK

Coverage

Start date

14/05/2019

End date

22/10/2019

Time lag
Not applicable
Geographic coverage
United Kingdom, United States
Maximum age range
150

Accessibility

Language
en
Controlled vocabulary
LOCAL
Format
Tab delimited text

Data Access Request

Dataset pipeline status
Not available
Time to dataset access
Other
Access request cost
No cost to access full GWAS Summary statistics (https://github.com/genomicsITER/PFgenetics)
Data Controller
Department of Health Sciences, University of Leicester, UK
Data Processor
Department of Health Sciences, University of Leicester, UK

Dataset Types: Health and disease


Collection Sources: