Bookmarks
Genomics England - OMOP CDM
Population Size
Not reported
Years
1971 - 2022
Associated BioSamples
None/not available
Geographic coverage
Not reported
Lead time
Not applicable
Summary
This is the first release of Genomics England's OMOP mappings, covering both primary and secondary data sets. The main focus is on cancer data, but HES A&E and the ukhsa covid swab tests are also included.
Documentation
Genomics England 100k data in OMOP CDM v5.4 format. Includes 100k data and PHE NCRAS data.
Dataset type
Health and disease
Dataset sub-type
Not applicable
Keywords
Provenance
Patient pathway description
Not representative
Image contrast
Not stated
Biological sample availability
None/not available
Details
Publishing frequency
Biannual
Version
5.4.0
Modified
08/10/2024
Citation Requirements
Genomics England Ltd
Coverage
Start date
09/06/1971
End date
30/12/2022
Time lag
2-6 months
Accessibility
Language
en
Controlled vocabulary
DM+D, ICD10CM, LOINC, NAACCR, RXNORM, ICDO3, NDC, ICD10, ICD9, SPL, ATC, READ, OTHER, SNOMED CT, CIEL, CPT4, APC, ICD9CM, HEMONC, NHS NATIONAL CODES, ICD10PCS, OPCS4, RXNORM EXTENSION, ODS
Format
TBC, but expected to be a relational model.
Data Access Request
Dataset pipeline status
Not available
Access rights
Time to dataset access
Not applicable
Access service description
Genomics England's research environment. Data are not currently available but we expect to publish them in the first half of 2024.
Jurisdiction
GB-ENG
Data Controller
GENOMICS ENGLAND
Data Processor
GENOMICS ENGLAND