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Wellcome Sanger Institute: Whole Exome Sequencing

Population Size

Not reported
Population Size statistic card

Years

2016

Years statistic card

Associated BioSamples

DNA

Plasma

Associated BioSamples statistic card

Geographic coverage

United Kingdom

Geographic coverage statistic card

Lead time

2-6 months

Lead time statistic card

Summary

There is a substantial overlap between the NIHR IBD BioResource and the IBD UK Genetics Consortium (IBDGC). The NIHR BioResource provides some DNA samples. IBDGC data is being provided by the Wellcome Sanger Institute, who are performing the sequencing.

Documentation

There is a substantial overlap between the participants in the NIHR IBD BioResource and the long-running IBD UK Genetics Consortium (IBDGC). The Wellcome Sanger Institute performs the sequencing work for the IBDGC. The NIHR BioResource provides DNA samples to this initiative. For those samples, and where there is an additional overlap, e.g. because a participant has been seen before and therefore no new sample is required, this data is being provided to the Gut Reaction Hub by the Wellcome Sanger Institute.

Dataset type

Health and disease, Omics

Dataset sub-type

Oral and gastrointestinal

Associated media

https://bioresource.nihr.ac.uk/centres-programmes/ibd-bioresource/gut-reaction-data-sourceshttps://bioresource.nihr.ac.uk/centres-programmes/ibd-bioresource/gut-reaction/

Keywords

Observations

Observed Node

Disambiguating Description

Measured Value

Measured Property

Observation Date

Events

Whole Exome Sequences - CRAM files

6996

COUNT

01 Sep 2021

Events

Whole Exome Sequences - VCF joint file

6996

COUNT

01 Sep 2021

Provenance

Purpose of dataset collection

Study

Source of data extraction

Machine generated

Collection source setting

Other

Image contrast

Not stated

Biological sample availability

DNA,Plasma,Serum

Details

Publishing frequency

Irregular

Version

1.0.0

Modified

08/10/2024

Citation Requirements

IBD Genetics Consortium UK, Welcome Sanger Institute

Coverage

Start date

13/01/2016

Time lag

More than 6 months

Geographic coverage

United Kingdom

Minimum age range

18

Maximum age range

85

Follow-up

1 - 10 Years

Accessibility

Language

en

Controlled vocabulary

LOCAL

Format

text, vcf

Data Access Request

Dataset pipeline status

Not available

Access rights

https://bioresource.nihr.ac.uk/using-our-bioresource

Time to dataset access

2-6 months

Access request cost

https://bioresource.nihr.ac.uk/using-our-bioresource/industry-researchers/industry-bioresource-usage-costs/

Access method category

TRE/SDE

Access service description

Data may only be accessed in an environment approved by the IBDGC UK.

Jurisdiction

GB-GB

Data use limitation

Research use only

Data use requirements

Institution-specific restrictions,Project-specific restrictions,Return to database or resource,Time limit on use,User-specific restriction

Data Controller

Cambridge University Hospitals NHS Foundation Trust (CUH)

Data Processor

Data processors are NIHR BioResource staff, others with Letters of Access to CUH and approved members of staff at the data centre (AIMES, https://aimes.uk/)

Dataset Types: Health and disease, Omics

Dataset Sub-types: Oral and gastrointestinal

Collection Sources: Other

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