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SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Scotland

Population Size

Not reported
Population Size statistic card

Years

2021

Years statistic card

Associated BioSamples

None/not available

Associated BioSamples statistic card

Geographic coverage

United Kingdom

Scotland

Geographic coverage statistic card

Lead time

2-4 weeks

Lead time statistic card

Summary

Summary of SARS-CoV-2 lineages and mutations

Documentation

File contains basic public metadata, including sequence_name, location, date, pangolin lineage assignment, version and associated scores, scorpio VOC/VUI constellation call and associated scores, key spike protein mutations calls and a list of all nucleotide mutations found.

Dataset type

Health and disease

Dataset sub-type

Not applicable

Associated media

https://publichealthscotland.scot/services/data-research-and-innovation-services/electronic-data-research-and-innovation-service-edris/overview/what-is-edris/

Keywords

Observations

Observed Node

Disambiguating Description

Measured Value

Measured Property

Observation Date

Events

721005

Count

20 Aug 2021

Provenance

Purpose of dataset collection

Other

Source of data extraction

LIMS

Collection source setting

Other

Patient pathway description

No

Image contrast

Not stated

Biological sample availability

None/not available

Structural Metadata

Details

Publishing frequency

Weekly

Version

6.0.0

Modified

08/10/2024

Distribution release date

19/08/2021

Citation Requirements

COG-UK

Coverage

Start date

28/02/2021

Time lag

1-2 weeks

Geographic coverage

United Kingdom, Scotland

Maximum age range

150

Follow-up

Other

Accessibility

Language

en

Controlled vocabulary

OTHER

Format

csv

Data Access Request

Dataset pipeline status

Not available

Access rights

https://publichealthscotland.scot/services/data-research-and-innovation-services/electronic-data-research-and-innovation-service-edris/services-we-offer/

Time to dataset access

2-4 weeks

Access request cost

https://publichealthscotland.scot/services/data-research-and-innovation-services/electronic-data-research-and-innovation-service-edris/cost-of-services/

Access method category

TRE/SDE

Access service description

Jurisdiction

GB-SCT

Data use limitation

Genetic studies only

Data use requirements

Project-specific restrictions

Data Controller

Public Health Scotland

Data Processor

Public Health Scotland

Dataset Types: Health and disease

Collection Sources: Other

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