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Cholecystectomy and post-operative complications from over 9000 surgical cases

Population Size

9,485

People

Population Size statistic card

Years

2004 - 2021

Years statistic card

Associated BioSamples

None/not available

Associated BioSamples statistic card

Geographic coverage

United Kingdom

England

Geographic coverage statistic card

Lead time

1-2 months

Lead time statistic card

Summary

A deeply phenotyped dataset of hospitalised patients undergoing an emergency or elective cholecystectomy. Longitudinal granular demographics, co-morbidities, laboratory results, physiology, medications, complications including sepsis and outcomes.

Documentation

Cholecystectomy is a common surgical procedure to remove the gall bladder, with over 1.2 million procedures performed in the USA each year. The most common indication is recurrent gall stones. The main operative incidents are haemorrhage, iatrogenic perforation of the gallbladder, and common bile duct (CBD) injuries. The main post-operative complications are sepsis, sub-hepatic abscess, haemorrhage, bile leakage and retained bile duct stones, with sepsis the most common post-operative complications.

Sepsis post-surgery is costly to the individual, associated with a reduced quality of life, increased length of stay, pain, loss of function and mortality. Although risk factors for developing sepsis are recognised, these cannot be applied at an individual level, making it difficult to predict who might develop sepsis, in order to implement mitigation strategies.

This dataset includes 9,400 individual surgical cases for cholecystectomy, including both elective and emergency surgery. The data includes detailed patient demography, measures of socio-economic deprivation, co-morbidities, the surgical indication, all physiological and pathological measurements, the surgery performed, anaesthetic used, medications given, complications and outcomes.

PIONEER geography: The West Midlands (WM) has a population of 5.9 million & includes a diverse ethnic & socio-economic mix.

Electronic Health Record: UHB is one of the largest NHS Trusts in England, providing direct acute services & specialist care across four hospital sites, with 2.2 million patient episodes per year, 2750 beds & an expanded 250 ITU bed capacity during COVID. UHB runs a fully electronic healthcare record (EHR) (PICS; Birmingham Systems), a shared primary & secondary care record (Your Care Connected) & a patient portal “My Health”.

Scope: Patients that had an emergency or elective Cholecystectomy procedure during their hospital stay. Longitudinal & individually linked, so that the preceding & subsequent health journey can be mapped & healthcare utilisation prior to & after admission understood. The dataset includes highly granular patient demographics, co-morbidities taken from ICD-10 & SNOMED-CT codes. Serial, structured data pertaining to process of care (timings, admissions, wards), presenting complaint, physiology readings (e.g. heart rate, blood pressure, respiratory rate, NEWS2 score and oxygen saturations), Lab analysis results (Alanine Transferase, albumin, EGFR, Creatine Kinase, White Blood Cells and others), microbiology results, surgery, medications, complications and all outcomes.

Available supplementary data: Matched controls; ambulance, OMOP data, synthetic data.

Available supplementary support: Analytics, Model build, validation & refinement; A.I.; Data partner support for ETL (extract, transform & load) process, Clinical expertise, Patient & end-user access, Purchaser access, Regulatory requirements, Data-driven trials, “fast screen” services.

Dataset type

Health and disease, Treatments/Interventions

Dataset sub-type

Oral and gastrointestinal

Dataset population size

9485

Keywords

Observations

Observed Node

Disambiguating Description

Measured Value

Measured Property

Observation Date

Persons

9,485 elective and emergency admissions with Cholecystectomy procedures

9485

Count

06 Dec 2021

Provenance

Purpose of dataset collection

Care

Source of data extraction

EPR

Collection source setting

Secondary care - In-patients, Secondary care - Accident and Emergency

Patient pathway description

Data is representative of the multi-ethnicity population within the West Midlands (42% non white). Data includes all patients admitted during this timeframe, with National data Opt Outs applied, and therefore is representative of admissions to secondary care. Data focuses on in-patient stay in hospital during the acute episode but can be supplemented on request to include previous and subsequent hospital contacts (including outpatient appointments) and ambulance, 111, 999 data.

Image contrast

Not stated

Biological sample availability

None/not available

Structural Metadata

Details

Publishing frequency

Quarterly

Version

1.0.0

Modified

08/10/2024

Distribution release date

06/12/2021

Citation Requirements

This publication uses data from PIONEER, an ethically approved database and analytical environment (East Midlands Derby Research Ethics 20/EM/0158)

Coverage

Start date

25/02/2004

End date

29/07/2021

Time lag

Other

Geographic coverage

United Kingdom, England, West Midlands

Minimum age range

18

Maximum age range

93

Follow-up

Other

Accessibility

Language

en

Alignment with standardised data models

LOCAL

Controlled vocabulary

SNOMED CT, ICD10, OPCS4

Format

SQL

Data Access Request

Dataset pipeline status

Available

Time to dataset access

1-2 months

Access request cost

www.pioneerdatahub.co.uk/data/data-services-costs/

Access method category

TRE/SDE

Access service description

Trusted Research Environments (TRE) are built using Microsoft Azure services and hosted in the UK to provide research teams a safe, secure and agile environment which allows users to quickly analyse, interpret and form an enriched view of primary care information through a range of integrated datasets.

Health data collated from multiple sources is ingested into a secure data lake which will then allow subsets of data to be made available to research teams on approval of a data request. Once approved a customer specific TRE is made available with a standard set of leading analytical tools from Microsoft including Azure Databricks, Azure Machine Learning, Azure SQL and Azure Synapse (for large-scale data warehouses). Specific tools can be provided at an additional cost over the standard platform data access charge and the PIONEER team will work with you to determine your exact needs.

Access to the TRE is managed using the latest virtual desktop technology to provide a safe and secure end-user experience. By utilising leading edge design PIONEER are able to create TREs rapidly to enable us to service any customer requirement.

Jurisdiction

GB-ENG

Data use limitation

General research use

Data use requirements

Project-specific restrictions

Data Controller

University Hospitals Birmingham NHS Foundation Trust

Dataset Types: Health and disease, Treatments/Interventions

Dataset Sub-types: Oral and gastrointestinal


Collection Sources: Secondary care - In-patients, Secondary care - Accident and Emergency

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