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Urinary tract infections acute presentations: microbiology, treatment, outcome

Population Size

91,568

People

Years

2000 - 2022

Associated BioSamples

None/not available

Geographic coverage

United Kingdom

England

Lead time

1-2 months

Summary

Acute presentations of UTIs (2000 to date). Deeply phenotyped, longitudinal granular data. Serial acuity, physiology, microbiology cultures, blood parameters, treatments, interventions, outcomes. Presenting complaints. Catheterisation status.

Documentation

Background: A urinary tract infection (UTI) is a common infection that affects the bladder (cystitis), urethra (urethritis) or kidneys (pyelonephritis). They are more prevalent in women, and the incidence in women over 65 years old is double the rate compared with the overall female population. Catheterisation is known to affect the likelihood of infection. The National Institute for Clinical Excellence suggests that UTIs in the elderly are often over-diagnosed and over-treated. This has led to NHS England requiring a reduction in the number of Trimethoprim prescriptions prescribed to patients over 70 years old.

PIONEER geography: The West Midlands (WM) has a population of 5.9 million and includes a diverse ethnic and socio-economic mix.

EHR: UHB is one of the largest NHS Trusts in England, providing direct acute services and specialist care across four hospital sites, with 2.2 million patient episodes per year, 2750 beds and an expanded 250 ITU bed capacity during COVID. UHB runs a fully electronic healthcare record (EHR) (PICS; Birmingham Systems), a shared primary and secondary care record (Your Care Connected) and a patient portal “My Health”.

Scope: All hospitalised patients from 2000 onwards, curated to focus on Urinary tract infection. Longitudinal and individually linked, so that the preceding and subsequent health journey can be mapped and healthcare utilisation prior to and after admission understood. The dataset includes highly granular patient demographics and co-morbidities taken from ICD-10 and SNOMED-CT codes. Serial, structured data pertaining to acute care process (timings, staff grades, specialty review, wards and triage). Along with presenting complaints, outpatients admissions, microbiology results, referrals, procedures, therapies, all physiology readings (pulse, blood pressure, respiratory rate, oxygen saturations and others), all blood results (urea, albumin, platelets, white blood cells and others). This dataset includes all prescribed and administered treatments including antibiotics, bacterial resistance patterns from microbiology assessments and outcomes. Linked images are also available (radiographs, CT scans, MRI).

Available supplementary data: Matched controls; ambulance, OMOP data, synthetic data.

Available supplementary support: Analytics, Model build, validation and refinement; A.I.; Data partner support for ETL (extract, transform and load) process, Clinical expertise, Patient and end-user access, Purchaser access, Regulatory requirements, Data-driven trials, “fast screen” services.

Dataset type
Health and disease, Treatments/Interventions
Dataset sub-type
Renal and urogenital
Dataset population size
91568

Keywords

Urinary Tract Infection, Infection, UTI, Antibiotics, urine, dipstick, cystitis, pyelonephritis, uropathogens, acute urethral syndrome, dehydrated, urine culture, bacteriuria, sensitivities, resistance, cultures, administration, intravenous, oral, Outcomes, Admissions, Demography, acuity, Sepsis, NEWS2, Mortality, length of stay

Observations

Observed Node
Disambiguating Description
Measured Value
Measured Property
Observation Date

Persons

91,568 spells with patients with diabetes between 12-01-2000 and 01-01-2022

91568

Count

02 Jan 2022

Provenance

Purpose of dataset collection
Care
Source of data extraction
EPR
Collection source setting
Secondary care - Accident and Emergency, Secondary care - Outpatients, Secondary care - In-patients
Patient pathway description
Data is representative of the multi-ethnicity population within the West Midlands (42% non white). Data includes all patients admitted during this timeframe, with National data Opt Outs applied, and therefore is representative of admissions to secondary care. Data focuses on in-patient stay in hospital during the acute episode but can be supplemented on request to include previous and subsequent hospital contacts (including outpatient appointments) and ambulance, 111, 999 data.
Image contrast
Not stated
Biological sample availability
None/not available

Structural Metadata

Details

Publishing frequency
Quarterly
Version
1.0.0
Modified

08/10/2024

Distribution release date

20/01/2022

Citation Requirements
This publication uses data from PIONEER, an ethically approved database and analytical environment (East Midlands Derby Research Ethics 20/EM/0158)

Coverage

Start date

12/01/2000

End date

01/01/2022

Time lag
Other
Geographic coverage
United Kingdom, England, West Midlands
Maximum age range
112
Follow-up
Other

Accessibility

Language
en
Alignment with standardised data models
LOCAL
Controlled vocabulary
SNOMED CT, OPCS4, ICD10
Format
SQL

Data Access Request

Dataset pipeline status
Available
Time to dataset access
1-2 months
Access request cost
www.pioneerdatahub.co.uk/data/data-services-costs/
Access method category
TRE/SDE
Access service description

Trusted Research Environments (TRE) are built using Microsoft Azure services and hosted in the UK to provide research teams a safe, secure and agile environment which allows users to quickly analyse, interpret and form an enriched view of primary care information through a range of integrated datasets.

Health data collated from multiple sources is ingested into a secure data lake which will then allow subsets of data to be made available to research teams on approval of a data request. Once approved a customer specific TRE is made available with a standard set of leading analytical tools from Microsoft including Azure Databricks, Azure Machine Learning, Azure SQL and Azure Synapse (for large-scale data warehouses). Specific tools can be provided at an additional cost over the standard platform data access charge and the PIONEER team will work with you to determine your exact needs.

Access to the TRE is managed using the latest virtual desktop technology to provide a safe and secure end-user experience. By utilising leading edge design PIONEER are able to create TREs rapidly to enable us to service any customer requirement.

Jurisdiction
GB-ENG
Data use limitation
Research use only
Data use requirements
Project-specific restrictions
Data Controller
University Hospitals Birmingham NHS Foundation Trust

Dataset Types: Health and disease, Treatments/Interventions

Dataset Sub-types: Renal and urogenital


Collection Sources: Secondary care - Accident and Emergency, Secondary care - Outpatients, Secondary care - In-patients