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Genomics England - OMOP CDM

Population Size

Not reported
Population Size statistic card

Years

1971 - 2022

Years statistic card

Associated BioSamples

None/not available

Associated BioSamples statistic card

Geographic coverage

Not reported
Geographic coverage statistic card

Lead time

Not applicable

Lead time statistic card

Summary

This is the first release of Genomics England's OMOP mappings, covering both primary and secondary data sets. The main focus is on cancer data, but HES A&E and the ukhsa covid swab tests are also included.

Documentation

Genomics England 100k data in OMOP CDM v5.4 format. Includes 100k data and PHE NCRAS data.

Dataset type

Health and disease

Keywords

Provenance

Patient pathway description

Not representative

Image contrast

Not stated

Biological sample availability

None/not available

Details

Publishing frequency

Biannual

Version

5.4.0

Modified

08/10/2024

Citation Requirements

Genomics England Ltd

Coverage

Start date

09/06/1971

End date

30/12/2022

Time lag

2-6 months

Accessibility

Language

en

Controlled vocabulary

DM+D, ICD10CM, LOINC, NAACCR, RXNORM, ICDO3, NDC, ICD10, ICD9, SPL, ATC, READ, OTHER, SNOMED CT, CIEL, CPT4, APC, ICD9CM, HEMONC, NHS NATIONAL CODES, ICD10PCS, OPCS4, RXNORM EXTENSION, ODS

Format

TBC, but expected to be a relational model.

Data Access Request

Dataset pipeline status

Not available

Access rights

https://www.genomicsengland.co.uk/research/academic

Time to dataset access

Not applicable

Access service description

Genomics England's research environment. Data are not currently available but we expect to publish them in the first half of 2024.

Jurisdiction

GB-ENG

Data Controller

GENOMICS ENGLAND

Data Processor

GENOMICS ENGLAND

Dataset Types: Health and disease

Collection Sources: